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17 Commits

Author SHA1 Message Date
Dane Sabo
d03604c363 Remove working notes and internal review docs before advisor sharing 
Delete informal brainstorming outlines and review audit files.
Clean inline editorial comments (\dasnote, \dasinline, \splitnote)
from .tex sources, preserving citation references as standard comments.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 2026-04-10 15:22:47 -04:00
Dane Sabo
1ba14bc8d7 Checked ALL references. V1 is COMPLETE! 2026-03-17 22:02:15 -04:00
Split
764e695c05 Wrap lines to 80 chars 2026-03-17 21:00:40 -04:00
Dane Sabo
c2d1c63bd0 figures are referenced 2026-03-17 20:51:04 -04:00
Split
449256f665 Connect both orphaned figures to prose (hybrid_automaton + strat_op_tact) 2026-03-17 20:33:22 -04:00
Split
8c70ff7dbf Fix Pressburger citation: soften claim to match source (describes manual integration, not 'significant source of errors') 2026-03-17 17:44:51 -04:00
Split
b7cadd3579 Resolve all splitfix/splitsuggest comments in approach.tex 
- Add assume-guarantee compositional verification citation (Lunze, Alur)
- Address FRET liveness limitation: redirect to continuous mode reachability
- Replace placeholder text with full reactive synthesis → code pipeline
  (Strix, GR(1) fragment, Mealy machines, scalability argument)
- Address parametric uncertainty gap: SpaceEx + conservative over-approximation
- Add systematic Theta_failure construction process (FMEA → parametric bounds)
- Add ARCADE automated code generation paragraph (Pressburger integration risk)
- New \\addedprose{} command for blue new prose in edit mode
 2026-03-17 15:09:00 -04:00
Split
f1691e24c4 Fix two LaTeX errors: remove itemize from dasinline (line 429), remove stray brace (line 673) 2026-03-17 14:56:24 -04:00
Split
96af36972f Fix all citations: add missing bib entries from Zotero, fix typos (lunz->lunze, katis_realizibility->realizability), add citations for hybrid automata (Alur), dL (Platzer), KeYmaera X (Fulton), barrier certificates (Prajna), reachability tools (Frehse SpaceEx, Guernic, Mitchell, Bansal HJ), Lyapunov (Branicky), convert biblatex->bibtex format 2026-03-16 17:37:53 -04:00
Dane Sabo
af2ce44fd6 feedback from earlier now integrated. Clear of almost all notes. 2026-03-16 17:15:35 -04:00
Split
4b2a733621 Edit Research Approach: trim intro, fix issue-point, add explanatory sentences, tighten Emerson section, address all DAS comments 2026-03-16 14:00:27 -04:00
Split
ed29f6a09b Apply first round of edits with strikethrough/red markup 2026-03-14 23:15:08 -04:00
Split
c7e7845c8f Add DAS reading comments as inline todonotes (cyan) 2026-03-14 23:13:41 -04:00
Split
b2598d3092 Fix unicode and escaping in review comments 2026-03-14 21:37:42 -04:00
Split
c37720f66b Add literature review annotations from NEEDS_REVIEWED papers 
Papers analyzed:
- Katis 2022, Pressburger 2023 (FRET)
- Maoz 2015, Luttenberger 2020 (reactive synthesis)
- Borrmann 2015, SOSTOOLS 2021 (barrier certificates)
- SpaceEx 2011, Flow* 2013, JuliaReach 2019 (reachability)
- Kapuria 2025 (decomposition-based verification)

Key findings:
- FRET lacks liveness support (important gap)
- GR(1) synthesis is tractable for reactor specs
- Compositional verification needs assume-guarantee citations
- Expulsory mode verification needs additional references

Report: needs-review-report.md
 2026-03-10 20:49:34 -04:00
Split
623f760084 Add Split's editorial comments with color-coded feedback 
Edit mode system:
- \editmode{1} enables comments + wider margins
- \editmode{0} hides all comments for final output

Comment types (color-coded):
- \splitnote{} (green): General observations, good work
- \splitsuggest{} (yellow): Suggestions to consider
- \splitpolish{} (orange): Needs polish, should fix
- \splitfix{} (red): Must fix, not acceptable

Comments added throughout all sections with substantive feedback
on structure, wording, and Gopen-style improvements.

Also fixed typos: 'ivariant' → 'invariant', 'excess' → 'access'
 2026-03-09 21:44:23 -04:00
Split
3373af9816 Rename versioned files to descriptive names 
Git handles versioning — no need for v1/v2/v3 suffixes.

Renamed:
- research_statement_v1.tex → research-statement.tex
- v1.tex (goals) → goals.tex
- v2.tex (state of art) → state-of-art.tex
- v3.tex (approach) → approach.tex
- v1.tex (metrics) → metrics.tex
- v1.tex (risks) → risks.tex
- v1.tex (impacts) → impacts.tex
- v1.tex (schedule) → schedule.tex

Old v1/v2 versions in subdirs preserved for reference.
 2026-03-09 21:27:20 -04:00