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Fix \split conflict, add .gitignore for build artifacts

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- Renamed \split → \splitnote (\split already defined by another package)
- Added .gitignore for *.aux, *.log, *.pdf, etc.
- Branch switching now clean — just recompile after switch
This commit is contained in:
Split 2026-03-09 21:34:40 -04:00
parent 3373af9816
commit a01f42d47c
8 changed files with 78 additions and 75 deletions
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38
.gitignore vendored Normal file
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@ -0,0 +1,38 @@
# LaTeX build artifacts
*.aux
*.bbl
*.blg
*.fdb_latexmk
*.fls
*.log
*.out
*.synctex.gz
*.toc
*.lof
*.lot
*.nav
*.snm
*.vrb
*.dvi
*.ps
# Generated PDF (recompile from source)
main.pdf
# Todonotes list
*.tdo
# Backup files
*.bak
*~
\#*\#
# OS files
.DS_Store
Thumbs.db
# Editor files
*.swp
*.swo
.vscode/
.idea/

6
1-goals-and-outcomes/goals.tex
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@ -3,7 +3,7 @@
% GOAL PARAGRAPH
The goal of this research is to develop a methodology for creating autonomous
hybrid control systems with mathematical guarantees of safe and correct
behavior.\split{Strong opening — direct and clear. No changes needed.}
behavior.\splitnote{Strong opening — direct and clear. No changes needed.}
% INTRODUCTORY PARAGRAPH Hook
Nuclear power plants require the highest levels of control system reliability,
@ -17,14 +17,14 @@ switch between different control modes based on their interpretation of plant
conditions and procedural guidance.
% Gap
This reliance on human operators prevents autonomous control capabilities and
creates a fundamental economic challenge for next-generation reactor designs.\split{Consider: ``...and creates a fundamental economic challenge'' — the ``and'' makes this feel like two separate issues. Maybe split into two sentences or tighten the causal link?}
creates a fundamental economic challenge for next-generation reactor designs.\splitnote{Consider: ``...and creates a fundamental economic challenge'' — the ``and'' makes this feel like two separate issues. Maybe split into two sentences or tighten the causal link?}
Small modular reactors, in particular, face per-megawatt staffing costs far
exceeding those of conventional plants and threaten their economic viability.
% Critical Need
What is needed is a method to create autonomous control systems that safely
manage complex operational sequences with the same assurance as human-operated
systems, but without constant human supervision.\split{``What is needed is'' — classic Gopen weak opening. Try: ``Autonomous control systems must safely manage...'' — puts the subject in the topic position.}
systems, but without constant human supervision.\splitnote{``What is needed is'' — classic Gopen weak opening. Try: ``Autonomous control systems must safely manage...'' — puts the subject in the topic position.}
% APPROACH PARAGRAPH Solution
To address this need, we will combine formal methods with control theory to
build hybrid control systems that are correct by construction.

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main.aux
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\relax
\@writefile{toc}{\contentsline {section}{Contents}{ii}{}\protected@file@percent }
\@writefile{toc}{\contentsline {section}{\numberline {1}Goals and Outcomes}{1}{}\protected@file@percent }
\@writefile{tdo}{\contentsline {todo}{\fcolorbox {black}{green!40}{\textcolor {green!40}{o}}\ Strong opening — direct and clear. No changes needed.}{1}{}\protected@file@percent }
\pgfsyspdfmark {pgfid1}{25927240}{44563390}
\pgfsyspdfmark {pgfid4}{38491976}{44537654}
\pgfsyspdfmark {pgfid5}{40806441}{44297970}
\@writefile{tdo}{\contentsline {todo}{\fcolorbox {black}{green!40}{\textcolor {green!40}{o}}\ Consider: ``...and creates a fundamental economic challenge'' — the ``and'' makes this feel like two separate issues. Maybe split into two sentences or tighten the causal link?}{1}{}\protected@file@percent }
\pgfsyspdfmark {pgfid6}{6549774}{36961214}
\pgfsyspdfmark {pgfid9}{38491976}{36935478}
\pgfsyspdfmark {pgfid10}{40806441}{36695794}
\@writefile{tdo}{\contentsline {todo}{\fcolorbox {black}{green!40}{\textcolor {green!40}{o}}\ ``What is needed is'' — classic Gopen weak opening. Try: ``Autonomous control systems must safely manage...'' — puts the subject in the topic position.}{1}{}\protected@file@percent }
\pgfsyspdfmark {pgfid11}{10907275}{33160126}
\pgfsyspdfmark {pgfid14}{38491976}{21872198}
\pgfsyspdfmark {pgfid15}{40806441}{21632514}
\@writefile{tdo}{\contentsline {todo}{\fcolorbox {black}{green!40}{\textcolor {green!40}{o}}\ This qualifications paragraph feels a bit tacked-on here. Consider moving to the end of the Approach section or integrating it more naturally into the ``why it will succeed'' argument.}{1}{}\protected@file@percent }
\pgfsyspdfmark {pgfid1}{20112834}{29690842}
\pgfsyspdfmark {pgfid16}{20112834}{17337306}
\citation{NUREG-0899,10CFR50.34}
\citation{10CFR55.59}
\citation{WRPS.Description,gentillon_westinghouse_1999}

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main.blg
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@ -1,11 +1,11 @@
This is BibTeX, Version 0.99d (TeX Live 2025)
Capacity: max_strings=200000, hash_size=200000, hash_prime=170003
The top-level auxiliary file: main.aux
White space in argument---line 23 of file main.aux
White space in argument---line 36 of file main.aux
: \citation{HANDBOOK
: ON HYBRID SYSTEMS}
I'm skipping whatever remains of this command
White space in argument---line 30 of file main.aux
White space in argument---line 43 of file main.aux
: \citation{MANYUS
: THESIS}
I'm skipping whatever remains of this command

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main.fdb_latexmk
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# Fdb version 4
["bibtex main"] 0 "main.aux" "main.bbl" "main" 1773106033.40961 -1
["bibtex main"] 1773106474.93179 "main.aux" "main.bbl" "main" 1773106474.96468 2
"./references.bib" 1770435796.31586 14069 2a4f74c587187a8a71049043171eb0fe ""
"/Users/split/Library/TinyTeX/texmf-dist/bibtex/bst/base/ieeetr.bst" 1292289607 18361 1a00e58565e7f19bf2b3e1bfb82254ae ""
"main.aux" 1773106033.2376 6065 320072990cd0549d1222adda8966f923 "pdflatex"
"main.aux" 1773106474.76109 7231 2769f5164b2ddb0c968502f2788a9df8 "pdflatex"
(generated)
"main.bbl"
"main.blg"
(rewritten before read)
["pdflatex"] 1773106032.05172 "main.tex" "main.pdf" "main" 1773106033.40982 2
["pdflatex"] 1773106473.46494 "main.tex" "main.pdf" "main" 1773106474.96491 0
"/Users/split/Library/TinyTeX/texmf-dist/fonts/enc/dvips/base/8r.enc" 1165713224 4850 80dc9bab7f31fb78a000ccfed0e27cab ""
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@ -239,7 +239,7 @@
"/Users/split/Library/TinyTeX/texmf-var/fonts/map/pdftex/updmap/pdftex.map" 1771879278 94137 fe53532163e1d92c794c09ef981daf8d ""
"/Users/split/Library/TinyTeX/texmf-var/web2c/pdftex/pdflatex.fmt" 1770868900 2236375 139dae50424001d43c49d2d79a9c607f ""
"/Users/split/Library/TinyTeX/texmf.cnf" 1770868853 637 edd806fb06a89761a6034e1968af9017 ""
"1-goals-and-outcomes/goals.tex" 1773106013.90511 6437 a0b91bc35049a7bdb682b56e09847db6 ""
"1-goals-and-outcomes/goals.tex" 1773106456.22497 6449 2997df4b13b90c69ee012b87ddd9cd94 ""
"1-goals-and-outcomes/research-statement.tex" 1773105333.1977 4450 070caee751214eaddffa6b3403f8ed43 ""
"2-state-of-the-art/state-of-art.tex" 1773105333.19841 12622 1460f7a4c2b48a1a772d8a0f5db216af ""
"3-research-approach/approach.tex" 1773105333.19929 35753 93d4c7b608feeba783c33affa59dd220 ""
@ -248,10 +248,10 @@
"6-broader-impacts/impacts.tex" 1773105333.20065 4834 418aae223b778759691eaf9124a5360c ""
"8-schedule/schedule.tex" 1773105333.20091 4473 8ad96bbf9cedf2ea09298ecbd4e01b83 ""
"dane_proposal_format.cls" 1770435796.31147 2883 ea175794171aa0291ef71716b2190bf0 ""
"main.aux" 1773106033.2376 6065 320072990cd0549d1222adda8966f923 "pdflatex"
"main.bbl" 1773105333.20144 2919 0ea026a17b15c1ad2ed657bdbf26dfdc "bibtex main"
"main.tex" 1773106026.10519 1375 7713fbae9f240a12fde027387bdbcf87 ""
"main.toc" 1773106033.2392 2129 eb658283ff0c872296846602d3e9dde6 "pdflatex"
"main.aux" 1773106474.76109 7231 2769f5164b2ddb0c968502f2788a9df8 "pdflatex"
"main.bbl" 1773106474.96361 2919 0ea026a17b15c1ad2ed657bdbf26dfdc "bibtex main"
"main.tex" 1773106452.46565 1379 944a0991d85aa6b5966f2f945e5ef1a1 ""
"main.toc" 1773106474.76365 2129 eb658283ff0c872296846602d3e9dde6 "pdflatex"
"todonotes.sty" 1773106013.90863 21404 916e19cbd009b6d289c8194b313d3895 ""
(generated)
"main.aux"

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main.log
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This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025) (preloaded format=pdflatex 2026.2.12) 9 MAR 2026 21:27
This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025) (preloaded format=pdflatex 2026.2.12) 9 MAR 2026 21:34
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
@ -774,22 +774,8 @@ Package: todonotes 2024/01/05 v1.1.7 Todonotes source and documentation.
Package: todonotes 2024/01/05
\c@@todonotes@numberoftodonotes=\count403
)
! LaTeX Error: Command \split already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
l.13 ...1]{\todo[color=green!40,author=Split]{#1}}
Your command was ignored.
Type I <command> <return> to replace it with another command,
or <return> to continue without it.
LaTeX Font Info: Trying to load font information for OT1+ptm on input line 18.
(/Users/split/Library/TinyTeX/texmf-dist/tex/latex/psnfss/ot1ptm.fd
(/Users/split/Library/TinyTeX/texmf-dist/tex/latex/psnfss/ot1ptm.fd
File: ot1ptm.fd 2001/06/04 font definitions for OT1/ptm.
) (/Users/split/Library/TinyTeX/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def
File: l3backend-pdftex.def 2025-10-09 L3 backend support: PDF output (pdfTeX)
@ -899,40 +885,10 @@ LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <7> not available
\openout4 = `main.toc'.
[2] (./1-goals-and-outcomes/goals.tex
Runaway argument?
\collect@body \gather@split {Strong opening — direct and clear. No \ETC.
! Paragraph ended before \document was complete.
<to be read again>
\par
l.7
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
LaTeX Warning: Marginpar on page 1 moved.
Runaway argument?
\collect@body \gather@split {Consider: ``...and creates a fundamental\ETC.
! Paragraph ended before \document was complete.
<to be read again>
\par
l.23
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
Runaway argument?
\collect@body \gather@split {``What is needed is'' — classic Gopen \ETC.
! Paragraph ended before \document was complete.
<to be read again>
\par
l.48
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
) [1] [2] (./2-state-of-the-art/state-of-art.tex [3] [4] [5]) [6] (./3-research-approach/approach.tex
[1]) [2] (./2-state-of-the-art/state-of-art.tex [3] [4] [5]) [6] (./3-research-approach/approach.tex
LaTeX Warning: Citation `HANDBOOK ON HYBRID SYSTEMS' on page 7 undefined on input line 50.
@ -964,23 +920,20 @@ L3 programming layer <2026-01-19>
LaTeX Warning: There were undefined references.
)
(\end occurred inside a group at level 3)
### semi simple group (level 3) entered at line 27 (\begingroup)
### semi simple group (level 2) entered at line 20 (\begingroup)
### semi simple group (level 1) entered at line 6 (\begingroup)
### bottom level
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
Here is how much of TeX's memory you used:
26181 strings out of 469514
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683164 words of font info for 159 fonts, out of 8000000 for 9000
14 hyphenation exceptions out of 8191
110i,9n,108p,1062b,1205s stack positions out of 10000i,1000n,20000p,200000b,200000s
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Output written on main.pdf (27 pages, 188487 bytes).
Output written on main.pdf (27 pages, 190748 bytes).
PDF statistics:
180 PDF objects out of 1000 (max. 8388607)
109 compressed objects within 2 object streams

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% === SPLIT'S EDITING COMMENTS ===
% Remove this block when done editing
\usepackage[colorinlistoftodos,prependcaption,textsize=small]{todonotes}
\newcommand{\split}[1]{\todo[color=green!40,author=Split]{#1}}
\newcommand{\splitnote}[1]{\todo[color=green!40,author=Split]{#1}}
\newcommand{\splitinline}[1]{\todo[inline,color=green!40,author=Split]{#1}}
\setlength{\marginparwidth}{2.5cm} % Make room for margin notes
% ================================