vault backup: 2025-02-10 11:37:31

300s School/'

@@ -0,0 +1,83 @@
+
+#!/bin/bash
+# ------------------------------------------------------------------
+# Author: ChatGPT
+# Generated on: $(date '+%Y-%m-%d')
+#
+# This script deletes existing README files matching "README - *.md"
+# and then recursively creates a table-of-contents README file in
+# each directory. The file is named "README - {Folder Name}.md".
+#
+# Each README includes:
+#   - An author/date header.
+#   - A header with the folder's name.
+#   - An alphabetically sorted list of immediate subdirectories,
+#     with links to that subdirectory’s own README.
+#   - An alphabetically sorted list of immediate files (excluding
+#     the generated README).
+#
+# It is written to handle blank spaces in file and folder names.
+# ------------------------------------------------------------------
+
+# Delete any existing README files matching "README - *.md"
+find . -type f -name 'README - *.md' -delete
+
+# Set the base directory (change "." if necessary)
+base_dir="."
+
+# Recursively find every directory starting from base_dir.
+find "$base_dir" -type d -print0 | while IFS= read -r -d '' dir; do
+    # Get the folder's base name (handles spaces correctly)
+    base=$(basename "$dir")
+    # Define the path for the README file: "README - {Folder Name}.md"
+    readme="$dir/README - ${base}.md"
+
+    # Write the header into the README file, including author/date attribution.
+    {
+      echo "Generated by ChatGPT on $(date '+%Y-%m-%d')"
+      echo ""
+      echo "# Table of Contents for ${base}"
+      echo ""
+    } > "$readme"
+
+    #########################
+    # Process Subdirectories
+    #########################
+    subdirs=()
+    # Find immediate subdirectories (depth 1) in the current directory.
+    while IFS= read -r -d '' subdir; do
+        subdirs+=( "$(basename "$subdir")" )
+    done < <(find "$dir" -mindepth 1 -maxdepth 1 -type d -print0)
+
+    if [ ${#subdirs[@]} -gt 0 ]; then
+        # Sort subdirectory names alphabetically while preserving spaces.
+        mapfile -t sorted_subdirs < <(printf "%s\n" "${subdirs[@]}" | sort)
+        echo "## Subdirectories" >> "$readme"
+        for sub in "${sorted_subdirs[@]}"; do
+            # Link to the subdirectory's README file.
+            # The link format: [[Subfolder/README - Subfolder]]
+            echo "- [[${sub}/README - ${sub}]]" >> "$readme"
+        done
+        echo "" >> "$readme"
+    fi
+
+    #################
+    # Process Files
+    #################
+    files=()
+    # Find immediate files (depth 1), excluding the generated README file.
+    while IFS= read -r -d '' file; do
+        files+=( "$(basename "$file")" )
+    done < <(find "$dir" -mindepth 1 -maxdepth 1 -type f ! -path "$readme" -print0)
+
+    if [ ${#files[@]} -gt 0 ]; then
+        # Sort file names alphabetically while preserving spaces.
+        mapfile -t sorted_files < <(printf "%s\n" "${files[@]}" | sort)
+        echo "## Files" >> "$readme"
+        for f in "${sorted_files[@]}"; do
+            echo "- [[${f}]]" >> "$readme"
+        done
+        echo "" >> "$readme"
+    fi
+done
+

300s School/ME 2016 - Nonlinear Dynamical Systems 1/2024-09-09/README - 2024-09-09.md

@@ -1,3 +1,4 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for 2024-09-09
 

300s School/ME 2016 - Nonlinear Dynamical Systems 1/README - ME 2016 - Nonlinear Dynamical Systems 1.md

@@ -1,3 +1,4 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for ME 2016 - Nonlinear Dynamical Systems 1
 
@@ -6,49 +7,19 @@
 - [[images/README - images]]
 
 ## Files
-- [[2024-08-26]]
-- [[Python]]
-- [[Introduction.md]]
-- [[2024-09-09]]
-- [[Example.py]]
-- [[2024-09-09]]
-- [[Frameworks]]
-- [[and]]
-- [[Review.md]]
-- [[2024-09-16]]
-- [[Plane]]
-- [[Diagrams.md]]
-- [[2024-09-18]]
-- [[Homework]]
-- [[1.md]]
-- [[2024-09-23]]
-- [[More]]
-- [[Phase]]
-- [[Plane]]
-- [[Stuff.md]]
-- [[2024-09-30]]
-- [[Limit]]
-- [[Cycles.md]]
-- [[2024-10-28]]
-- [[Stability.md]]
-- [[2024-11-11]]
-- [[Nonlinear]]
-- [[3D]]
-- [[Phenomena.md]]
-- [[2024-11-18]]
-- [[Volume]]
-- [[Contraction.md]]
-- [[2024-12-02]]
-- [[Delay]]
-- [[Differential]]
-- [[Equation.md]]
+- [[2024-08-26 Python Introduction.md]]
+- [[2024-09-09 Example.py]]
+- [[2024-09-09 Frameworks and Review.md]]
+- [[2024-09-16 Plane Diagrams.md]]
+- [[2024-09-18 Homework 1.md]]
+- [[2024-09-23 More Phase Plane Stuff.md]]
+- [[2024-09-30 Limit Cycles.md]]
+- [[2024-10-28 Stability.md]]
+- [[2024-11-11 Nonlinear 3D Phenomena.md]]
+- [[2024-11-18 Volume Contraction.md]]
+- [[2024-12-02 Delay Differential Equation.md]]
 - [[ME2016_MEMS1016___Mini_Project_1.pdf]]
-- [[Mini]]
-- [[Project.md]]
+- [[Mini Project.md]]
 - [[reddup]]
-- [[To]]
-- [[Do]]
-- [[-]]
-- [[ME]]
-- [[2016.md]]
+- [[To Do - ME 2016.md]]
 

300s School/ME 2016 - Nonlinear Dynamical Systems 1/images/README - images.md

@@ -1,27 +1,12 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for images
 
 ## Files
-- [[How]]
-- [[do]]
-- [[we]]
-- [[deal]]
-- [[with]]
-- [[nonlinearities?.png]]
-- [[LINE]]
-- [[Systems]]
-- [[in]]
-- [[the]]
-- [[Plane.png]]
-- [[Mode]]
-- [[Diagram.png]]
-- [[Nonlinear]]
-- [[Planar]]
-- [[Systems.png]]
-- [[Pasted]]
-- [[image]]
-- [[20240923133628.png]]
-- [[Pasted]]
-- [[image]]
-- [[20240923133900.png]]
+- [[How do we deal with nonlinearities?.png]]
+- [[LINE Systems in the Plane.png]]
+- [[Mode Diagram.png]]
+- [[Nonlinear Planar Systems.png]]
+- [[Pasted image 20240923133628.png]]
+- [[Pasted image 20240923133900.png]]
 

300s School/ME 2046 - Digital Control Theory/README - ME 2046 - Digital Control Theory.md

@@ -1,18 +1,10 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for ME 2046 - Digital Control Theory
 
 ## Files
-- [[2025-01-09]]
-- [[Sampling]]
-- [[Theory.md]]
-- [[2025-01-16]]
-- [[The]]
-- [[Z]]
-- [[Transform.md]]
-- [[Homework]]
-- [[1.md]]
-- [[!Things]]
-- [[That]]
-- [[Need]]
-- [[Done.md]]
+- [[2025-01-09 Sampling Theory.md]]
+- [[2025-01-16 The Z Transform.md]]
+- [[Homework 1.md]]
+- [[!Things That Need Done.md]]
 

300s School/ME 2085 - Graduate Seminar/README - ME 2085 - Graduate Seminar.md

@@ -1,107 +1,13 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for ME 2085 - Graduate Seminar
 
 ## Files
-- [[2024-08-29]]
-- [[Fatigue-]]
-- [[and]]
-- [[Toughness-Based]]
-- [[Process]]
-- [[Windows]]
-- [[in]]
-- [[Additively]]
-- [[Manufactured]]
-- [[Materials]]
-- [[-]]
-- [[John]]
-- [[Lewandowski.md]]
-- [[2024-09-05]]
-- [[Model-Based]]
-- [[Design]]
-- [[of]]
-- [[Coatings]]
-- [[for]]
-- [[Gas]]
-- [[Turbine]]
-- [[Engines]]
-- [[-]]
-- [[R.]]
-- [[Wesley]]
-- [[Jackson.md]]
-- [[2024-09-12]]
-- [[(OHARA]]
-- [[STUDENT]]
-- [[CENTER]]
-- [[DINING]]
-- [[ROOM)]]
-- [[Overview]]
-- [[of]]
-- [[NSF]]
-- [[&]]
-- [[Research]]
-- [[Funding]]
-- [[Opportunities]]
-- [[-]]
-- [[Ronald]]
-- [[D.]]
-- [[Joslin.md]]
-- [[2024-10-03]]
-- [[Materials]]
-- [[Design]]
-- [[in]]
-- [[Nuclear]]
-- [[Systems]]
-- [[and]]
-- [[Additive]]
-- [[Manufacturing]]
-- [[to]]
-- [[Overcome]]
-- [[Design]]
-- [[Challenges]]
-- [[-]]
-- [[Peter]]
-- [[Hosemann.md]]
-- [[2024-10-31]]
-- [[Net]]
-- [[Zero]]
-- [[Pathways]]
-- [[in]]
-- [[the]]
-- [[US]]
-- [[Energy]]
-- [[System]]
-- [[-]]
-- [[Timothy]]
-- [[Lieuwen.md]]
-- [[2024-11-21]]
-- [[Tensor]]
-- [[Networks]]
-- [[for]]
-- [[Non-Equilibrium]]
-- [[Quantum]]
-- [[Many-Body]]
-- [[Systems]]
-- [[-]]
-- [[Michael]]
-- [[Zwolak.md]]
-- [[2024-12-03]]
-- [[Oxide]]
-- [[Particle]]
-- [[Dynamics]]
-- [[at]]
-- [[the]]
-- [[Melt]]
-- [[Pool]]
-- [[Scale]]
-- [[in]]
-- [[Laser]]
-- [[Poweder]]
-- [[bed]]
-- [[Fusion]]
-- [[Additive]]
-- [[Manufacturing]]
-- [[-]]
-- [[Sneha]]
-- [[Prabha]]
-- [[Narra.md]]
+- [[2024-08-29 Fatigue- and Toughness-Based Process Windows in Additively Manufactured Materials  - John Lewandowski.md]]
+- [[2024-09-05 Model-Based Design of Coatings for Gas Turbine Engines  - R. Wesley Jackson.md]]
+- [[2024-09-12 (OHARA STUDENT CENTER DINING ROOM) Overview of NSF & Research Funding Opportunities - Ronald D. Joslin.md]]
+- [[2024-10-03 Materials Design in Nuclear Systems and Additive Manufacturing to Overcome Design Challenges - Peter Hosemann.md]]
+- [[2024-10-31 Net Zero Pathways in the US Energy System - Timothy Lieuwen.md]]
+- [[2024-11-21 Tensor Networks for Non-Equilibrium Quantum Many-Body Systems - Michael Zwolak.md]]
+- [[2024-12-03 Oxide Particle Dynamics at the Melt Pool Scale in Laser Poweder bed Fusion Additive Manufacturing - Sneha Prabha Narra.md]]
 

300s School/ME 2150 - High Assurance Cyber-Physical Systems/README - ME 2150 - High Assurance Cyber-Physical Systems.md

@@ -1,43 +1,15 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for ME 2150 - High Assurance Cyber-Physical Systems
 
 ## Files
-- [[2025-01-09]]
-- [[Syllabus]]
-- [[and]]
-- [[Introduction.md]]
-- [[2025-01-14]]
-- [[Microkernels.md]]
-- [[2025-01-16]]
-- [[HACMS]]
-- [[Program]]
-- [[Overview.md]]
-- [[Capabilities]]
-- [[Tutorials.md]]
-- [[Investigating]]
-- [[seL4]]
-- [[with]]
-- [[Docker.md]]
-- [[ME]]
-- [[2150]]
-- [[-]]
-- [[High-Assurance]]
-- [[Cyber-Physical]]
-- [[Systems]]
-- [[Homework]]
-- [[1]]
-- [[Complete.md]]
-- [[ME]]
-- [[2150]]
-- [[-]]
-- [[High-Assurance]]
-- [[Cyber-Physical]]
-- [[Systems]]
-- [[Homework]]
-- [[1.md]]
+- [[2025-01-09 Syllabus and Introduction.md]]
+- [[2025-01-14 Microkernels.md]]
+- [[2025-01-16 HACMS Program Overview.md]]
+- [[Capabilities Tutorials.md]]
+- [[Investigating seL4 with Docker.md]]
+- [[ME 2150 - High-Assurance Cyber-Physical Systems Homework 1 Complete.md]]
+- [[ME 2150 - High-Assurance Cyber-Physical Systems Homework 1.md]]
 - [[press.png]]
-- [[!Things]]
-- [[That]]
-- [[Need]]
-- [[Done.md]]
+- [[!Things That Need Done.md]]
 

300s School/ME 3100 - Engineering Research and Leadership Management/README - ME 3100 - Engineering Research and Leadership Management.md

@@ -1,34 +1,13 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for ME 3100 - Engineering Research and Leadership Management
 
 ## Files
-- [[1.]]
-- [[Goals]]
-- [[and]]
-- [[Outcomes.md]]
-- [[2.]]
-- [[State]]
-- [[of]]
-- [[the]]
-- [[Art]]
-- [[and]]
-- [[Limits]]
-- [[of]]
-- [[Current]]
-- [[Practice.md]]
-- [[3.]]
-- [[Research]]
-- [[Approach.md]]
-- [[4.]]
-- [[Metrics]]
-- [[of]]
-- [[Success.md]]
-- [[5.]]
-- [[Research]]
-- [[Impact.md]]
-- [[6.]]
-- [[Risks]]
-- [[and]]
-- [[Contingencies.md]]
+- [[1. Goals and Outcomes.md]]
+- [[2. State of the Art and Limits of Current Practice.md]]
+- [[3. Research Approach.md]]
+- [[4. Metrics of Success.md]]
+- [[5. Research Impact.md]]
+- [[6. Risks and Contingencies.md]]
 - [[ERLM_Structure_of_Objectives_Page.pdf]]
 

300s School/NUCE 2100 - Fundamentals of Nuclear Engineering/README - NUCE 2100 - Fundamentals of Nuclear Engineering.md

@@ -1,83 +1,32 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for NUCE 2100 - Fundamentals of Nuclear Engineering
 
 ## Files
-- [[2024-08-27]]
-- [[Introduction.md]]
-- [[2024-09-03]]
-- [[Homework]]
-- [[1.md]]
-- [[2024-09-03]]
-- [[Homework]]
-- [[1.pdf]]
-- [[2024-09-03]]
-- [[Module]]
-- [[2.md]]
-- [[2024-09-10]]
-- [[Homework]]
-- [[2.md]]
-- [[2024-09-10]]
-- [[Module]]
-- [[3.md]]
-- [[2024-09-17]]
-- [[Homework]]
-- [[3.md]]
-- [[2024-09-17]]
-- [[Module]]
-- [[5]]
-- [[Nuclear]]
-- [[Fission]]
-- [[Basics.md]]
-- [[2024-09-24]]
-- [[Homework]]
-- [[4.md]]
-- [[2024-09-24]]
-- [[Week]]
-- [[5.md]]
-- [[2024-10-01]]
-- [[Homework]]
-- [[5.md]]
-- [[2024-10-01]]
-- [[Project]]
-- [[Topic]]
-- [[and]]
-- [[Description.md]]
-- [[2024-10-08]]
-- [[Midterm]]
-- [[.md]]
-- [[2024-10-29]]
-- [[Homework]]
-- [[6.md]]
-- [[2024-11-05]]
-- [[Homework]]
-- [[7.md]]
-- [[2024-11-12]]
-- [[Homework]]
-- [[8.md]]
-- [[2024-11-19]]
-- [[Homework]]
-- [[9.md]]
-- [[2024-12-03]]
-- [[Homework]]
-- [[10.md]]
-- [[2024-12-10]]
-- [[Project]]
-- [[Paper]]
-- [[and]]
-- [[Presentation.md]]
+- [[2024-08-27 Introduction.md]]
+- [[2024-09-03 Homework 1.md]]
+- [[2024-09-03 Homework 1.pdf]]
+- [[2024-09-03 Module 2.md]]
+- [[2024-09-10 Homework 2.md]]
+- [[2024-09-10 Module 3.md]]
+- [[2024-09-17 Homework 3.md]]
+- [[2024-09-17 Module 5 Nuclear Fission Basics.md]]
+- [[2024-09-24 Homework 4.md]]
+- [[2024-09-24 Week 5.md]]
+- [[2024-10-01 Homework 5.md]]
+- [[2024-10-01 Project Topic and Description.md]]
+- [[2024-10-08 Midterm .md]]
+- [[2024-10-29 Homework 6.md]]
+- [[2024-11-05 Homework 7.md]]
+- [[2024-11-12 Homework 8.md]]
+- [[2024-11-19 Homework 9.md]]
+- [[2024-12-03 Homework 10.md]]
+- [[2024-12-10 Project Paper and Presentation.md]]
 - [[HW2.md]]
 - [[HW2.pdf]]
 - [[HW2v2.md]]
-- [[Pasted]]
-- [[image]]
-- [[20240827190612.png]]
-- [[Pasted]]
-- [[image]]
-- [[20240827193439.png]]
-- [[Pasted]]
-- [[image]]
-- [[20240827195025.png]]
-- [[Project]]
-- [[and]]
-- [[Presentation.md]]
+- [[Pasted image 20240827190612.png]]
+- [[Pasted image 20240827193439.png]]
+- [[Pasted image 20240827195025.png]]
+- [[Project and Presentation.md]]
 

300s School/NUCE 2103 - Integration of Plant Systems with the Reactor Core/README - NUCE 2103 - Integration of Plant Systems with the Reactor Core.md

@@ -1,9 +1,7 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for NUCE 2103 - Integration of Plant Systems with the Reactor Core
 
 ## Files
-- [[NUCE]]
-- [[2103]]
-- [[Final]]
-- [[Exam.md]]
+- [[NUCE 2103 Final Exam.md]]
 

300s School/NUCE 2113 - Radiation Detection and Measurement/README - NUCE 2113 - Radiation Detection and Measurement.md

@@ -1,15 +1,10 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for NUCE 2113 - Radiation Detection and Measurement
 
 ## Files
-- [[Laboratory]]
-- [[1.md]]
-- [[Laboratory]]
-- [[2.md]]
-- [[Laboratory]]
-- [[3.md]]
-- [[!Things]]
-- [[That]]
-- [[Need]]
-- [[Done.md]]
+- [[Laboratory 1.md]]
+- [[Laboratory 2.md]]
+- [[Laboratory 3.md]]
+- [[!Things That Need Done.md]]
 

300s School/README - ..md

@@ -1,66 +1,18 @@
+Generated by ChatGPT on 2025-02-10
 
 # Table of Contents for .
 
 ## Subdirectories
-- [[ME/README - ME]]
-- [[2016/README - 2016]]
-- [[-/README - -]]
-- [[Nonlinear/README - Nonlinear]]
-- [[Dynamical/README - Dynamical]]
-- [[Systems/README - Systems]]
-- [[1/README - 1]]
-- [[ME/README - ME]]
-- [[2046/README - 2046]]
-- [[-/README - -]]
-- [[Digital/README - Digital]]
-- [[Control/README - Control]]
-- [[Theory/README - Theory]]
-- [[ME/README - ME]]
-- [[2085/README - 2085]]
-- [[-/README - -]]
-- [[Graduate/README - Graduate]]
-- [[Seminar/README - Seminar]]
-- [[ME/README - ME]]
-- [[2150/README - 2150]]
-- [[-/README - -]]
-- [[High/README - High]]
-- [[Assurance/README - Assurance]]
-- [[Cyber-Physical/README - Cyber-Physical]]
-- [[Systems/README - Systems]]
-- [[ME/README - ME]]
-- [[3100/README - 3100]]
-- [[-/README - -]]
-- [[Engineering/README - Engineering]]
-- [[Research/README - Research]]
-- [[and/README - and]]
-- [[Leadership/README - Leadership]]
-- [[Management/README - Management]]
-- [[NUCE/README - NUCE]]
-- [[2100/README - 2100]]
-- [[-/README - -]]
-- [[Fundamentals/README - Fundamentals]]
-- [[of/README - of]]
-- [[Nuclear/README - Nuclear]]
-- [[Engineering/README - Engineering]]
-- [[NUCE/README - NUCE]]
-- [[2103/README - 2103]]
-- [[-/README - -]]
-- [[Integration/README - Integration]]
-- [[of/README - of]]
-- [[Plant/README - Plant]]
-- [[Systems/README - Systems]]
-- [[with/README - with]]
-- [[the/README - the]]
-- [[Reactor/README - Reactor]]
-- [[Core/README - Core]]
-- [[NUCE/README - NUCE]]
-- [[2113/README - 2113]]
-- [[-/README - -]]
-- [[Radiation/README - Radiation]]
-- [[Detection/README - Detection]]
-- [[and/README - and]]
-- [[Measurement/README - Measurement]]
+- [[ME 2016 - Nonlinear Dynamical Systems 1/README - ME 2016 - Nonlinear Dynamical Systems 1]]
+- [[ME 2046 - Digital Control Theory/README - ME 2046 - Digital Control Theory]]
+- [[ME 2085 - Graduate Seminar/README - ME 2085 - Graduate Seminar]]
+- [[ME 2150 - High Assurance Cyber-Physical Systems/README - ME 2150 - High Assurance Cyber-Physical Systems]]
+- [[ME 3100 - Engineering Research and Leadership Management/README - ME 3100 - Engineering Research and Leadership Management]]
+- [[NUCE 2100 - Fundamentals of Nuclear Engineering/README - NUCE 2100 - Fundamentals of Nuclear Engineering]]
+- [[NUCE 2103 - Integration of Plant Systems with the Reactor Core/README - NUCE 2103 - Integration of Plant Systems with the Reactor Core]]
+- [[NUCE 2113 - Radiation Detection and Measurement/README - NUCE 2113 - Radiation Detection and Measurement]]
 
 ## Files
+- [[']]
 - [[reddup.sh]]
 

300s School/reddup.sh

@@ -26,14 +26,14 @@ base_dir="."
 
 # Recursively find every directory starting from base_dir.
 find "$base_dir" -type d -print0 | while IFS= read -r -d '' dir; do
-    # Get the folder's base name (tolerant of spaces)
+    # Get the folder's base name (handles spaces correctly)
     base=$(basename "$dir")
-    # Define the path for the README file. Format: "README - {Folder Name}.md"
+    # Define the path for the README file: "README - {Folder Name}.md"
     readme="$dir/README - ${base}.md"
 
-    # Write the header into the README file, including author attribution and date.
+    # Write the header into the README file, including author/date attribution.
     {
-#      echo "Generated by ChatGPT on $(date '+%Y-%m-%d')"
+      echo "Generated by ChatGPT on $(date '+%Y-%m-%d')"
       echo ""
       echo "# Table of Contents for ${base}"
       echo ""
@@ -49,8 +49,8 @@ find "$base_dir" -type d -print0 | while IFS= read -r -d '' dir; do
     done < <(find "$dir" -mindepth 1 -maxdepth 1 -type d -print0)
 
     if [ ${#subdirs[@]} -gt 0 ]; then
-        # Sort subdirectory names alphabetically.
-        sorted_subdirs=($(printf "%s\n" "${subdirs[@]}" | sort))
+        # Sort subdirectory names alphabetically while preserving spaces.
+        mapfile -t sorted_subdirs < <(printf "%s\n" "${subdirs[@]}" | sort)
         echo "## Subdirectories" >> "$readme"
         for sub in "${sorted_subdirs[@]}"; do
             # Link to the subdirectory's README file.
@@ -70,8 +70,8 @@ find "$base_dir" -type d -print0 | while IFS= read -r -d '' dir; do
     done < <(find "$dir" -mindepth 1 -maxdepth 1 -type f ! -path "$readme" -print0)
 
     if [ ${#files[@]} -gt 0 ]; then
-        # Sort file names alphabetically.
-        sorted_files=($(printf "%s\n" "${files[@]}" | sort))
+        # Sort file names alphabetically while preserving spaces.
+        mapfile -t sorted_files < <(printf "%s\n" "${files[@]}" | sort)
         echo "## Files" >> "$readme"
         for f in "${sorted_files[@]}"; do
             echo "- [[${f}]]" >> "$readme"